HL_8ETI_029

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAAGUG

Length

8 nucleotides

Bulged bases

8ETI|1|1|A|3343, 8ETI|1|1|A|3344, 8ETI|1|1|U|3346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ETI_029 not in the Motif Atlas

Homologous match to HL_8C3A_070

Geometric discrepancy: 0.2199

The information below is about HL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8ETI|1|1|C|3340
8ETI|1|1|G|3341
8ETI|1|1|G|3342
8ETI|1|1|A|3343
8ETI|1|1|A|3344
8ETI|1|1|G|3345
8ETI|1|1|U|3346
8ETI|1|1|G|3347

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain B

60S ribosomal protein L3-A

Chain O

60S ribosomal protein L16-B