HL_8EUB_028

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_028 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.1826

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8EUB|1|A1|U|1267
8EUB|1|A1|G|1268
8EUB|1|A1|U|1269
8EUB|1|A1|A|1270
8EUB|1|A1|A|1271
8EUB|1|A1|C|1272
8EUB|1|A1|A|1273
8EUB|1|A1|A|1274

Current chains

Chain A1

28S rRNA

Nearby chains

Chain Am

Ubiquitin-60S ribosomal protein L40

Chain DC

Elongation factor 2

Chain VA

60S acidic ribosomal protein P0