HL_8EUB_105
3D structure
- PDB id
- 8EUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 8EUB|1|B5|G|1243
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EUB_105 not in the Motif Atlas
- Homologous match to HL_4V88_213
- Geometric discrepancy: 0.2238
- The information below is about HL_4V88_213
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
8EUB|1|B5|A|1238
8EUB|1|B5|U|1239
8EUB|1|B5|U|1240
8EUB|1|B5|G|1241
8EUB|1|B5|A|1242
8EUB|1|B5|G|1243
8EUB|1|B5|A|1244
8EUB|1|B5|G|1245
8EUB|1|B5|C|1246
8EUB|1|B5|U|1247
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BP
- RPS15 isoform 1
- Chain Bd
- RPS29A isoform 1
- Chain Bf
- Ubiquitin-40S ribosomal protein S31
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