HL_8EUB_118

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UUUGGGCAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_118 not in the Motif Atlas

Geometric match to HL_3MJA_001

Geometric discrepancy: 0.2381

The information below is about HL_3MJA_001

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_41019.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8EUB|1|EC|U|6902
8EUB|1|EC|U|6903
8EUB|1|EC|U|6904
8EUB|1|EC|G|6905
8EUB|1|EC|G|6906
8EUB|1|EC|G|6907
8EUB|1|EC|C|6908
8EUB|1|EC|A|6909
8EUB|1|EC|A|6910
8EUB|1|EC|A|6911

Current chains

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain DC

Elongation factor 2