3D structure

PDB id
8EV7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs
Experimental method
X-RAY DIFFRACTION
Resolution
2.89 Å

Loop

Sequence
UAUUGAAGCA
Length
10 nucleotides
Bulged bases
8EV7|1|1A|C|597
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EV7_017 not in the Motif Atlas
Geometric match to HL_7RQB_018
Geometric discrepancy: 0.0464
The information below is about HL_7RQB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_41998.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
69

Unit IDs

8EV7|1|1A|U|589
8EV7|1|1A|A|590
8EV7|1|1A|U|591
8EV7|1|1A|U|592
8EV7|1|1A|G|593
8EV7|1|1A|A|594
8EV7|1|1A|A|595
8EV7|1|1A|G|596
8EV7|1|1A|C|597
8EV7|1|1A|A|598

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L32
Chain 1E
50S ribosomal protein L3
Chain 1P
50S ribosomal protein L15
Chain 1V
50S ribosomal protein L21

Coloring options:


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