HL_8EVP_012

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UUGCCUCGGUAA

Length

12 nucleotides

Bulged bases

8EVP|1|A1|G|542, 8EVP|1|A1|C|546, 8EVP|1|A1|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVP_012 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1573

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8EVP|1|A1|U|540
8EVP|1|A1|U|541
8EVP|1|A1|G|542
8EVP|1|A1|C|543
8EVP|1|A1|C|544
8EVP|1|A1|U|545
8EVP|1|A1|C|546
8EVP|1|A1|G|547
8EVP|1|A1|G|548
8EVP|1|A1|U|549
8EVP|1|A1|A|550
8EVP|1|A1|A|551

Current chains

Chain A1

25S rRNA

Nearby chains