HL_8EVP_023
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GUUCCGGGGUCACCUUGAC
- Length
- 19 nucleotides
- Bulged bases
- 8EVP|1|A1|C|1017
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVP_023 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.3759
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8EVP|1|A1|G|1013
8EVP|1|A1|U|1014
8EVP|1|A1|U|1015
8EVP|1|A1|C|1016
8EVP|1|A1|C|1017
8EVP|1|A1|G|1018
8EVP|1|A1|G|1019
8EVP|1|A1|G|1020
8EVP|1|A1|G|1021
8EVP|1|A1|U|1022
8EVP|1|A1|C|1023
8EVP|1|A1|A|1030
8EVP|1|A1|C|1031
8EVP|1|A1|C|1032
8EVP|1|A1|U|1033
8EVP|1|A1|U|1034
8EVP|1|A1|G|1035
8EVP|1|A1|A|1036
8EVP|1|A1|C|1037
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain BP
- RPS15 isoform 1
- Chain EC
- Internal ribosome entry site
Coloring options: