HL_8EVP_029
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 8EVP|1|A1|G|1349, 8EVP|1|A1|A|1350, 8EVP|1|A1|U|1351, 8EVP|1|A1|A|1352, 8EVP|1|A1|U|1353, 8EVP|1|A1|G|1354, 8EVP|1|A1|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVP_029 not in the Motif Atlas
- Homologous match to HL_8C3A_029
- Geometric discrepancy: 0.4354
- The information below is about HL_8C3A_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13577.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8EVP|1|A1|U|1347
8EVP|1|A1|U|1348
8EVP|1|A1|G|1349
8EVP|1|A1|A|1350
8EVP|1|A1|U|1351
8EVP|1|A1|A|1352
8EVP|1|A1|U|1353
8EVP|1|A1|G|1354
8EVP|1|A1|A|1355
8EVP|1|A1|U|1356
8EVP|1|A1|G|1357
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AC
- RPL4A isoform 1
- Chain AE
- 60S ribosomal protein L6-A
- Chain AQ
- 60S ribosomal protein L18-A
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