HL_8EVP_034
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CCUGAUUUUAUGCAGG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVP_034 not in the Motif Atlas
- Geometric match to HL_8VTW_010
- Geometric discrepancy: 0.1234
- The information below is about HL_8VTW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
8EVP|1|A1|C|1562
8EVP|1|A1|C|1563
8EVP|1|A1|U|1564
8EVP|1|A1|G|1565
8EVP|1|A1|A|1566
8EVP|1|A1|U|1567
8EVP|1|A1|U|1568
8EVP|1|A1|U|1569
8EVP|1|A1|U|1570
8EVP|1|A1|A|1571
8EVP|1|A1|U|1572
8EVP|1|A1|G|1573
8EVP|1|A1|C|1574
8EVP|1|A1|A|1575
8EVP|1|A1|G|1576
8EVP|1|A1|G|1577
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AX
- 60S ribosomal protein L25
Coloring options: