HL_8EVP_049

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUA(A2M)CUAUGAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVP_049 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1283

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8EVP|1|A1|G|2253
8EVP|1|A1|U|2254
8EVP|1|A1|A|2255
8EVP|1|A1|A2M|2256
8EVP|1|A1|C|2257
8EVP|1|A1|U|2258
8EVP|1|A1|A|2259
8EVP|1|A1|U|2260
8EVP|1|A1|G|2261
8EVP|1|A1|A|2262
8EVP|1|A1|C|2263

Current chains

Chain A1

25S rRNA

Nearby chains

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain EC

Internal ribosome entry site