HL_8EVP_087
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 8EVP|1|B5|C|402, 8EVP|1|B5|G|403
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVP_087 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0808
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8EVP|1|B5|C|393
8EVP|1|B5|C|394
8EVP|1|B5|U|395
8EVP|1|B5|G|396
8EVP|1|B5|A|397
8EVP|1|B5|G|398
8EVP|1|B5|A|399
8EVP|1|B5|A|400
8EVP|1|B5|A|401
8EVP|1|B5|C|402
8EVP|1|B5|G|403
8EVP|1|B5|G|404
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BG
- 40S ribosomal protein S6-A
- Chain BI
- 40S ribosomal protein S8-A
- Chain BY
- 40S ribosomal protein S24-A
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