HL_8EVP_098

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVP_098 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1545

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8EVP|1|B5|A|899
8EVP|1|B5|G|900
8EVP|1|B5|G|901
8EVP|1|B5|U|902
8EVP|1|B5|G|903
8EVP|1|B5|A|904
8EVP|1|B5|A|905
8EVP|1|B5|A|906
8EVP|1|B5|U|907
8EVP|1|B5|U|908

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BO

40S ribosomal protein S14-A

Chain Ba

RPS26B isoform 1