HL_8EVP_101

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

8EVP|1|B5|U|1057, 8EVP|1|B5|U|1058, 8EVP|1|B5|U|1059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVP_101 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3741

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8EVP|1|B5|U|1054
8EVP|1|B5|U|1055
8EVP|1|B5|U|1056
8EVP|1|B5|U|1057
8EVP|1|B5|U|1058
8EVP|1|B5|U|1059
8EVP|1|B5|A|1060
8EVP|1|B5|A|1061
8EVP|1|B5|U|1062
8EVP|1|B5|G|1063

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BB

RPS1A isoform 1

Chain Bb

40S ribosomal protein S27-A