HL_8EVP_111
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 8EVP|1|B5|U|2165, 8EVP|1|B5|U|2166, 8EVP|1|B5|A|2167
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVP_111 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.13
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8EVP|1|B5|A|2158
8EVP|1|B5|U|2159
8EVP|1|B5|U|2160
8EVP|1|B5|G|2161
8EVP|1|B5|U|2162
8EVP|1|B5|A|2163
8EVP|1|B5|A|2164
8EVP|1|B5|U|2165
8EVP|1|B5|U|2166
8EVP|1|B5|A|2167
8EVP|1|B5|U|2168
8EVP|1|B5|U|2169
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BP
- RPS15 isoform 1
- Chain BS
- 40S ribosomal protein S18-A
- Chain BT
- 40S ribosomal protein S19-A
- Chain Bd
- RPS29A isoform 1
Coloring options: