HL_8EVP_118

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CACUUUGGGCAAAGUAG

Length

17 nucleotides

Bulged bases

8EVP|1|EC|A|6914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVP_118 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2967

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8EVP|1|EC|C|6899
8EVP|1|EC|A|6900
8EVP|1|EC|C|6901
8EVP|1|EC|U|6902
8EVP|1|EC|U|6903
8EVP|1|EC|U|6904
8EVP|1|EC|G|6905
8EVP|1|EC|G|6906
8EVP|1|EC|G|6907
8EVP|1|EC|C|6908
8EVP|1|EC|A|6909
8EVP|1|EC|A|6910
8EVP|1|EC|A|6911
8EVP|1|EC|G|6912
8EVP|1|EC|U|6913
8EVP|1|EC|A|6914
8EVP|1|EC|G|6915

Current chains

Chain EC

Internal ribosome entry site

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain BP

RPS15 isoform 1