HL_8EVP_123
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVP_123 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.0823
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8EVP|1|A3|U|32
8EVP|1|A3|U|33
8EVP|1|A3|C|34
8EVP|1|A3|C|35
8EVP|1|A3|C|36
8EVP|1|A3|G|37
8EVP|1|A3|U|38
8EVP|1|A3|C|39
8EVP|1|A3|C|40
8EVP|1|A3|G|41
8EVP|1|A3|A|42
8EVP|1|A3|U|43
8EVP|1|A3|C|44
8EVP|1|A3|A|45
Current chains
- Chain A3
- 5s rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- RPL5 isoform 1
- Chain AJ
- RPL11A isoform 1
Coloring options: