HL_8EVQ_050

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8EVQ|1|A1|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVQ_050 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0698

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8EVQ|1|A1|U|2292
8EVQ|1|A1|C|2293
8EVQ|1|A1|U|2294
8EVQ|1|A1|A|2295
8EVQ|1|A1|A|2296
8EVQ|1|A1|U|2297
8EVQ|1|A1|U|2298
8EVQ|1|A1|A|2299
8EVQ|1|A1|G|2300

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AV

60S ribosomal protein L23-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA