HL_8EVQ_107

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8EVQ|1|B5|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVQ_107 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.0999

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8EVQ|1|B5|C|1309
8EVQ|1|B5|U|1310
8EVQ|1|B5|U|1311
8EVQ|1|B5|A|1312
8EVQ|1|B5|A|1313
8EVQ|1|B5|U|1314
8EVQ|1|B5|U|1315
8EVQ|1|B5|G|1316

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BR

40S ribosomal protein S17-A