HL_8EVQ_118
3D structure
- PDB id
- 8EVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- UUUGGGCAAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVQ_118 not in the Motif Atlas
- Geometric match to HL_3MJA_001
- Geometric discrepancy: 0.2201
- The information below is about HL_3MJA_001
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_41019.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8EVQ|1|EC|U|6902
8EVQ|1|EC|U|6903
8EVQ|1|EC|U|6904
8EVQ|1|EC|G|6905
8EVQ|1|EC|G|6906
8EVQ|1|EC|G|6907
8EVQ|1|EC|C|6908
8EVQ|1|EC|A|6909
8EVQ|1|EC|A|6910
8EVQ|1|EC|A|6911
Current chains
- Chain EC
- Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
- Chain BQ
- 40S ribosomal protein S16-A
- Chain DC
- Elongation factor 2
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