HL_8EVR_097

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UAUUUUGUUGGUUUCUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVR_097 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4593

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8EVR|1|B5|U|828
8EVR|1|B5|A|829
8EVR|1|B5|U|830
8EVR|1|B5|U|831
8EVR|1|B5|U|832
8EVR|1|B5|U|833
8EVR|1|B5|G|834
8EVR|1|B5|U|835
8EVR|1|B5|U|836
8EVR|1|B5|G|837
8EVR|1|B5|G|838
8EVR|1|B5|U|839
8EVR|1|B5|U|840
8EVR|1|B5|U|841
8EVR|1|B5|C|842
8EVR|1|B5|U|843
8EVR|1|B5|A|844

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BL

40S ribosomal protein S11-A