HL_8EVS_097

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UAUUUUGUUGGUUUCUA

Length

17 nucleotides

Bulged bases

8EVS|1|B5|G|834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVS_097 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4319

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8EVS|1|B5|U|828
8EVS|1|B5|A|829
8EVS|1|B5|U|830
8EVS|1|B5|U|831
8EVS|1|B5|U|832
8EVS|1|B5|U|833
8EVS|1|B5|G|834
8EVS|1|B5|U|835
8EVS|1|B5|U|836
8EVS|1|B5|G|837
8EVS|1|B5|G|838
8EVS|1|B5|U|839
8EVS|1|B5|U|840
8EVS|1|B5|U|841
8EVS|1|B5|C|842
8EVS|1|B5|U|843
8EVS|1|B5|A|844

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BL

40S ribosomal protein S11-A