HL_8EVT_008

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

8EVT|1|A1|G|283, 8EVT|1|A1|A|284, 8EVT|1|A1|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_008 not in the Motif Atlas

Homologous match to HL_5TBW_008

Geometric discrepancy: 0.0565

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8EVT|1|A1|U|278
8EVT|1|A1|U|279
8EVT|1|A1|U|280
8EVT|1|A1|G|281
8EVT|1|A1|G|282
8EVT|1|A1|G|283
8EVT|1|A1|A|284
8EVT|1|A1|A|285
8EVT|1|A1|U|286
8EVT|1|A1|G|287

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L13-A

Chain AN

60S ribosomal protein L15-A

Chain Aa

60S ribosomal protein L28

Chain Ao

60S ribosomal protein L42-A