HL_8EVT_104

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCAGCCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_104 not in the Motif Atlas

Geometric match to HL_4KZD_001

Geometric discrepancy: 0.2117

The information below is about HL_4KZD_001

Detailed Annotation

Fab BL3-6 binding hairpin with tSW

Broad Annotation

No text annotation

Motif group

HL_22584.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

26

Unit IDs

8EVT|1|EC|G|6862
8EVT|1|EC|C|6863
8EVT|1|EC|A|6864
8EVT|1|EC|G|6865
8EVT|1|EC|C|6866
8EVT|1|EC|C|6867
8EVT|1|EC|C|6868

Current chains

Chain EC

TSV IRES

Nearby chains

Chain BF

Rps5p

Chain BZ

RPS25A isoform 1