3D structure

PDB id
8EVT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GCAGCCC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EVT_104 not in the Motif Atlas
Geometric match to HL_4KZD_001
Geometric discrepancy: 0.2117
The information below is about HL_4KZD_001
Detailed Annotation
Fab BL3-6 binding hairpin with tSW
Broad Annotation
No text annotation
Motif group
HL_22584.6
Basepair signature
cWW-tSW-F
Number of instances in this motif group
26

Unit IDs

8EVT|1|EC|G|6862
8EVT|1|EC|C|6863
8EVT|1|EC|A|6864
8EVT|1|EC|G|6865
8EVT|1|EC|C|6866
8EVT|1|EC|C|6867
8EVT|1|EC|C|6868

Current chains

Chain EC
TSV IRES

Nearby chains

Chain BF
Rps5p
Chain BZ
RPS25A isoform 1

Coloring options:


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