HL_8EVT_104
3D structure
- PDB id
- 8EVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCAGCCC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVT_104 not in the Motif Atlas
- Geometric match to HL_4KZD_001
- Geometric discrepancy: 0.2117
- The information below is about HL_4KZD_001
- Detailed Annotation
- Fab BL3-6 binding hairpin with tSW
- Broad Annotation
- No text annotation
- Motif group
- HL_22584.6
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 26
Unit IDs
8EVT|1|EC|G|6862
8EVT|1|EC|C|6863
8EVT|1|EC|A|6864
8EVT|1|EC|G|6865
8EVT|1|EC|C|6866
8EVT|1|EC|C|6867
8EVT|1|EC|C|6868
Current chains
- Chain EC
- TSV IRES
Nearby chains
- Chain BF
- Rps5p
- Chain BZ
- RPS25A isoform 1
Coloring options: