HL_8EVT_114
3D structure
- PDB id
- 8EVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 8EVT|1|A1|A|2256, 8EVT|1|A1|C|2257
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVT_114 not in the Motif Atlas
- Homologous match to HL_8CRE_047
- Geometric discrepancy: 0.4574
- The information below is about HL_8CRE_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25847.2
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8EVT|1|A1|G|2253
8EVT|1|A1|U|2254
8EVT|1|A1|A|2255
8EVT|1|A1|A|2256
8EVT|1|A1|C|2257
8EVT|1|A1|U|2258
8EVT|1|A1|A|2259
8EVT|1|A1|U|2260
8EVT|1|A1|G|2261
8EVT|1|A1|A|2262
8EVT|1|A1|C|2263
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
- Chain BX
- 40S ribosomal protein S23-A
- Chain Be
- 40S ribosomal protein S30-A
- Chain EC
- TSV IRES
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