HL_8EWB_028

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_028 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.2271

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8EWB|1|A1|U|1267
8EWB|1|A1|G|1268
8EWB|1|A1|U|1269
8EWB|1|A1|A|1270
8EWB|1|A1|A|1271
8EWB|1|A1|C|1272
8EWB|1|A1|A|1273
8EWB|1|A1|A|1274

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Am

Ubiquitin-60S ribosomal protein L40

Chain DC

Elongation factor 2

Chain V

60S acidic ribosomal protein P0