HL_8EWB_050

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8EWB|1|A1|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_050 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0751

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8EWB|1|A1|U|2292
8EWB|1|A1|C|2293
8EWB|1|A1|U|2294
8EWB|1|A1|A|2295
8EWB|1|A1|A|2296
8EWB|1|A1|U|2297
8EWB|1|A1|U|2298
8EWB|1|A1|A|2299
8EWB|1|A1|G|2300

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AV

60S ribosomal protein L23-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA