HL_8EWB_083
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GAUGAUUC
- Length
- 8 nucleotides
- Bulged bases
- 8EWB|1|B5|U|249
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EWB_083 not in the Motif Atlas
- Homologous match to HL_4V88_191
- Geometric discrepancy: 0.1018
- The information below is about HL_4V88_191
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8EWB|1|B5|G|243
8EWB|1|B5|A|244
8EWB|1|B5|U|245
8EWB|1|B5|G|246
8EWB|1|B5|A|247
8EWB|1|B5|U|248
8EWB|1|B5|U|249
8EWB|1|B5|C|250
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BG
- 40S ribosomal protein S6-A
- Chain BL
- 40S ribosomal protein S11-A
Coloring options: