HL_8EWB_085

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

8EWB|1|B5|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_085 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1045

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

8EWB|1|B5|G|330
8EWB|1|B5|A|331
8EWB|1|B5|U|332
8EWB|1|B5|A|333
8EWB|1|B5|G|334
8EWB|1|B5|U|335
8EWB|1|B5|G|336
8EWB|1|B5|G|337
8EWB|1|B5|C|338

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A

Chain BL

40S ribosomal protein S11-A