HL_8EWB_105

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8EWB|1|B5|G|1243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_105 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2438

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8EWB|1|B5|A|1238
8EWB|1|B5|U|1239
8EWB|1|B5|U|1240
8EWB|1|B5|G|1241
8EWB|1|B5|A|1242
8EWB|1|B5|G|1243
8EWB|1|B5|A|1244
8EWB|1|B5|G|1245
8EWB|1|B5|C|1246
8EWB|1|B5|U|1247

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BP

RPS15 isoform 1

Chain Bd

RPS29A isoform 1

Chain Bf

Ubiquitin-40S ribosomal protein S31