HL_8EWC_034

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AUUUUAU

Length

7 nucleotides

Bulged bases

8EWC|1|A1|U|1568

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWC_034 not in the Motif Atlas

Geometric match to HL_4V88_190

Geometric discrepancy: 0.356

The information below is about HL_4V88_190

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91015.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

8EWC|1|A1|A|1566
8EWC|1|A1|U|1567
8EWC|1|A1|U|1568
8EWC|1|A1|U|1569
8EWC|1|A1|U|1570
8EWC|1|A1|A|1571
8EWC|1|A1|U|1572

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA