3D structure

PDB id
8EYQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S_delta_ksgA_h44_inactive_conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAUCAGAAUGC
Length
11 nucleotides
Bulged bases
8EYQ|1|A|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EYQ_030 not in the Motif Atlas
Homologous match to HL_5J7L_029
Geometric discrepancy: 0.3726
The information below is about HL_5J7L_029
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8EYQ|1|A|G|1356
8EYQ|1|A|A|1357
8EYQ|1|A|U|1358
8EYQ|1|A|C|1359
8EYQ|1|A|A|1360
8EYQ|1|A|G|1361
8EYQ|1|A|A|1362
8EYQ|1|A|A|1363
8EYQ|1|A|U|1364
8EYQ|1|A|G|1365
8EYQ|1|A|C|1366

Current chains

Chain A
16S_rRNA

Nearby chains

Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14

Coloring options:


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