HL_8FC5_172

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8FC5|1|2A|G|2751, 8FC5|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC5_172 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0553

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8FC5|1|2A|C|2745
8FC5|1|2A|U|2746
8FC5|1|2A|G|2747
8FC5|1|2A|A|2748
8FC5|1|2A|A|2749
8FC5|1|2A|A|2750
8FC5|1|2A|G|2751
8FC5|1|2A|C|2752
8FC5|1|2A|A|2753
8FC5|1|2A|U|2754
8FC5|1|2A|C|2755
8FC5|1|2A|U|2756
8FC5|1|2A|A|2757
8FC5|1|2A|A|2758
8FC5|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6