HL_8FC5_193

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

8FC5|1|2a|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FC5_193 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.1093

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8FC5|1|2a|G|786
8FC5|1|2a|A|787
8FC5|1|2a|U|788
8FC5|1|2a|U|789
8FC5|1|2a|A|790
8FC5|1|2a|G|791
8FC5|1|2a|A|792
8FC5|1|2a|U|793
8FC5|1|2a|A|794
8FC5|1|2a|C|795
8FC5|1|2a|C|796

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11

Chain 2y

Ribosome-associated inhibitor A