HL_8FIZ_029

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

8FIZ|1|AA|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_029 not in the Motif Atlas

Homologous match to HL_5J7L_029

Geometric discrepancy: 0.1364

The information below is about HL_5J7L_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8FIZ|1|AA|G|1356
8FIZ|1|AA|A|1357
8FIZ|1|AA|U|1358
8FIZ|1|AA|C|1359
8FIZ|1|AA|A|1360
8FIZ|1|AA|G|1361
8FIZ|1|AA|A|1362
8FIZ|1|AA|A|1363
8FIZ|1|AA|U|1364
8FIZ|1|AA|G|1365
8FIZ|1|AA|C|1366

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AF

30S ribosomal protein S14

Chain AH

30S ribosomal protein S10

Chain AK

30S ribosomal protein S9