HL_8FIZ_036

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_036 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1709

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8FIZ|1|BA|U|158
8FIZ|1|BA|G|159
8FIZ|1|BA|A|160
8FIZ|1|BA|A|161
8FIZ|1|BA|U|162
8FIZ|1|BA|C|163
8FIZ|1|BA|C|164
8FIZ|1|BA|A|165
8FIZ|1|BA|U|166
8FIZ|1|BA|A|167
8FIZ|1|BA|G|168

Current chains

Chain BA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L28