HL_8FIZ_043

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8FIZ|1|BA|G|386, 8FIZ|1|BA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_043 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1372

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8FIZ|1|BA|A|382
8FIZ|1|BA|C|383
8FIZ|1|BA|A|384
8FIZ|1|BA|C|385
8FIZ|1|BA|G|386
8FIZ|1|BA|U|387
8FIZ|1|BA|G|388
8FIZ|1|BA|G|389
8FIZ|1|BA|U|390
8FIZ|1|BA|A|391
8FIZ|1|BA|U|392

Current chains

Chain BA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L28