HL_8FIZ_102

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FIZ_102 not in the Motif Atlas

Homologous match to HL_4V9Q_215

Geometric discrepancy: 0.1942

The information below is about HL_4V9Q_215

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

8FIZ|1|BB|G|54
8FIZ|1|BB|U|55
8FIZ|1|BB|U|56
8FIZ|1|BB|C|57
8FIZ|1|BB|A|58
8FIZ|1|BB|A|59
8FIZ|1|BB|A|60
8FIZ|1|BB|U|61
8FIZ|1|BB|C|62

Current chains

Chain BB

P-site tRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BG

50S ribosomal protein L5

Chain BU

50S ribosomal protein L16