HL_8FKS_013

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

8FKS|1|L3|G|294, 8FKS|1|L3|A|295, 8FKS|1|L3|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKS_013 not in the Motif Atlas

Homologous match to HL_5TBW_008

Geometric discrepancy: 0.1104

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8FKS|1|L3|C|289
8FKS|1|L3|U|290
8FKS|1|L3|U|291
8FKS|1|L3|G|292
8FKS|1|L3|G|293
8FKS|1|L3|G|294
8FKS|1|L3|A|295
8FKS|1|L3|A|296
8FKS|1|L3|U|297
8FKS|1|L3|G|298

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain SO

Ribosome biogenesis protein BRX1 homolog