HL_8FKV_013

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

8FKV|1|L3|G|294, 8FKV|1|L3|A|295, 8FKV|1|L3|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKV_013 not in the Motif Atlas

Homologous match to HL_5TBW_008

Geometric discrepancy: 0.1148

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8FKV|1|L3|C|289
8FKV|1|L3|U|290
8FKV|1|L3|U|291
8FKV|1|L3|G|292
8FKV|1|L3|G|293
8FKV|1|L3|G|294
8FKV|1|L3|A|295
8FKV|1|L3|A|296
8FKV|1|L3|U|297
8FKV|1|L3|G|298

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L6

60S ribosomal protein L13

Chain L9

60S ribosomal protein L15

Chain SO

Ribosome biogenesis protein BRX1 homolog