HL_8FKY_031

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

8FKY|1|L3|C|2383

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKY_031 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.3565

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8FKY|1|L3|A|2376
8FKY|1|L3|C|2377
8FKY|1|L3|G|2378
8FKY|1|L3|A|2379
8FKY|1|L3|G|2380
8FKY|1|L3|A|2381
8FKY|1|L3|A|2382
8FKY|1|L3|C|2383
8FKY|1|L3|U|2384

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L19