HL_8FKZ_062

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8FKZ|1|L3|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKZ_062 not in the Motif Atlas

Homologous match to HL_8CRE_061

Geometric discrepancy: 0.1969

The information below is about HL_8CRE_061

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8FKZ|1|L3|A|4474
8FKZ|1|L3|G|4475
8FKZ|1|L3|C|4476
8FKZ|1|L3|A|4477
8FKZ|1|L3|G|4478
8FKZ|1|L3|A|4479
8FKZ|1|L3|A|4480
8FKZ|1|L3|U|4481

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain SG

60S ribosomal protein L9

Chain SR

GTP-binding protein 4