HL_8FL6_012

3D structure

PDB id

8FL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

8FL6|1|L3|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL6_012 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.4649

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8FL6|1|L3|G|230
8FL6|1|L3|U|231
8FL6|1|L3|G|232
8FL6|1|L3|U|233
8FL6|1|L3|G|234
8FL6|1|L3|A|235
8FL6|1|L3|G|236
8FL6|1|L3|G|237
8FL6|1|L3|C|238

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LI

60S ribosomal protein L26

Chain SA

60S ribosomal protein L4