HL_8FL9_004

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCCUC

Length

5 nucleotides

Bulged bases

8FL9|1|L1|U|127

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL9_004 not in the Motif Atlas

Geometric match to HL_8VTW_051

Geometric discrepancy: 0.3529

The information below is about HL_8VTW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8FL9|1|L1|G|122
8FL9|1|L1|C|125
8FL9|1|L1|C|126
8FL9|1|L1|U|127
8FL9|1|L1|C|128

Current chains

Chain L1

5.8S rRNA

Nearby chains

Chain L3

Large subunit ribosomal RNA; LSU rRNA

Chain LH

60S ribosomal protein L23a