3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
UUGAAG(A2M)G
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FL9_015 not in the Motif Atlas
Geometric match to HL_4WF9_041
Geometric discrepancy: 0.3476
The information below is about HL_4WF9_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_65167.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
16

Unit IDs

8FL9|1|L3|U|392
8FL9|1|L3|U|393
8FL9|1|L3|G|394
8FL9|1|L3|A|395
8FL9|1|L3|A|396
8FL9|1|L3|G|397
8FL9|1|L3|A2M|398
8FL9|1|L3|G|399

Current chains

Chain L3
28S rRNA

Nearby chains

Chain LA
60S ribosomal protein L17
Chain SR
GTP-binding protein 4

Coloring options:


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