HL_8FL9_048

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CUUC(OMG)G

Length

6 nucleotides

Bulged bases

8FL9|1|L3|U|2874

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL9_048 not in the Motif Atlas

Geometric match to HL_4LFB_009

Geometric discrepancy: 0.1343

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

8FL9|1|L3|C|2872
8FL9|1|L3|U|2873
8FL9|1|L3|U|2874
8FL9|1|L3|C|2875
8FL9|1|L3|OMG|2876
8FL9|1|L3|G|2877

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LX

60S ribosomal protein L37a