HL_8FL9_070

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

8FL9|1|L3|G|4910, 8FL9|1|L3|A|4911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL9_070 not in the Motif Atlas

Geometric match to HL_5TBW_069

Geometric discrepancy: 0.1501

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8FL9|1|L3|G|4907
8FL9|1|L3|G|4908
8FL9|1|L3|A|4909
8FL9|1|L3|G|4910
8FL9|1|L3|A|4911
8FL9|1|L3|G|4912
8FL9|1|L3|G|4913
8FL9|1|L3|C|4914

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain LN

60S ribosomal protein L3

Chain NK

Protein LLP homolog