HL_8FL9_081
3D structure
- PDB id
- 8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State J3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FL9_081 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1288
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8FL9|1|L4|A|32
8FL9|1|L4|U|33
8FL9|1|L4|C|34
8FL9|1|L4|U|35
8FL9|1|L4|C|36
8FL9|1|L4|G|37
8FL9|1|L4|U|38
8FL9|1|L4|C|39
8FL9|1|L4|U|40
8FL9|1|L4|G|41
8FL9|1|L4|A|42
8FL9|1|L4|U|43
8FL9|1|L4|C|44
8FL9|1|L4|U|45
Current chains
- Chain L4
- 5S rRNA
Nearby chains
- Chain L3
- Large subunit ribosomal RNA; LSU rRNA
- Chain L5
- 60S ribosomal protein L11
- Chain SB
- 60S ribosomal protein L5
Coloring options: