HL_8FLE_064

3D structure

PDB id

8FLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GAU(OMU)(OMG)(PSU)UCACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLE_064 not in the Motif Atlas

Geometric match to HL_6GSK_218

Geometric discrepancy: 0.3672

The information below is about HL_6GSK_218

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14063.2

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8FLE|1|L3|G|4495
8FLE|1|L3|A|4496
8FLE|1|L3|U|4497
8FLE|1|L3|OMU|4498
8FLE|1|L3|OMG|4499
8FLE|1|L3|PSU|4500
8FLE|1|L3|U|4501
8FLE|1|L3|C|4502
8FLE|1|L3|A|4503
8FLE|1|L3|C|4504
8FLE|1|L3|C|4505

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L23

Chain LN

60S ribosomal protein L3