HL_8FLF_057

3D structure

PDB id

8FLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

8FLF|1|L3|A|4214, 8FLF|1|L3|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLF_057 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1322

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8FLF|1|L3|U|4210
8FLF|1|L3|C|4211
8FLF|1|L3|A|4212
8FLF|1|L3|A|4213
8FLF|1|L3|A|4214
8FLF|1|L3|C|4215
8FLF|1|L3|G|4216
8FLF|1|L3|G|4217
8FLF|1|L3|U|4218
8FLF|1|L3|A|4219
8FLF|1|L3|6MZ|4220
8FLF|1|L3|C|4221
8FLF|1|L3|G|4222

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L21

Chain LM

60S ribosomal protein L29