HL_8FOM_102

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8FOM|1|RA|G|2751, 8FOM|1|RA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_102 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1225

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8FOM|1|RA|C|2745
8FOM|1|RA|U|2746
8FOM|1|RA|G|2747
8FOM|1|RA|A|2748
8FOM|1|RA|A|2749
8FOM|1|RA|A|2750
8FOM|1|RA|G|2751
8FOM|1|RA|C|2752
8FOM|1|RA|A|2753
8FOM|1|RA|U|2754
8FOM|1|RA|C|2755
8FOM|1|RA|U|2756
8FOM|1|RA|A|2757
8FOM|1|RA|A|2758
8FOM|1|RA|G|2759

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13